I have been fighting this very problem since having the conversion done on my Vic. Since having it tuned by another SCT shop the bouncing idle is gone but it will still stall at low speeds and has a bad hesitation/stutter like the engine wants to stall out on initial acceleration from a stop. Sometimes when starting after a brief stop (like running in the 7-11) the rpms will shoot up to 1400-1800 or so and hang around there. If I try to put it in gear to move it immediately stalls right out. Restarting after it does that is hard (spins but won't fire up) and I have to hold the accelerator to get it going again then its a cat and mouse game with the rpms and the gear selector... sometimes stalling two or three times just trying to back up! Its just no fun driving the car when you dread coming to a stop because you don't know what the car is going to do when its time to go again.
Now where's that thread on regretting mods, I've got a whole sig full of 'em...
2010 F150 XLT SuperCrew 5.4 4x4
Royal Red w/stone interior
Mama's truck!
2003 Ford Crown Victoria LX Sport the Crown Rauder
Silver Frost w/charcoal interior
Modded a little